Core alignments

See Rytas Vilgalys’ website, Duke University, for alignments, nexus files, publications, primer sequences and the latest developments on phylogenetic studies of the Agaricales.

Publications and data sets

Lutzoni, F., Kauff, F., Cox, J. C., McLaughlin, D., Celio, G., Dentinger, B., Padamsee, M., Hibbett, D., James, T. Y., Baloch, E., Grube, M., Reeb, V., Hofstetter, V., Shcoch, C., Arnold, A. E., Miadlikowska, J., Spatafora, J., Johnson, D., Hambleton, S., Crockett, M., Shoemaker, R., Sung, G.-H., Lücking, R., Lumbsch, T., O'Donnell, K., Binder, M., Diederich, P., Ertz, D., Gueidan, C., Hansen, K., Harris, R. C., Hosaka, K., Lim, Y.-W., Matheny, B., Nishida, H., Pfister, D., Rogers, J., Rossman, A., Schmitt, I., Sipman, H., Stone, J., Sugiyama, J., Yahr, R., and Vilgalys, R. 2004. Assembling the fungal tree of life: Progress, classification, and evolution of subcellular traits. American Journal of Botany 91:1446-1480.
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Redhead, S. A., Lutzoni, F., Moncalvo, J.-M. and Vilgalys, R . 2002. Phylogeny of agarics: partial systematics solutions for core omphalinoid genera in the Agaricales (Euagarics). Mycotaxon 83:19-57.
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Redhead, S. A., Moncalvo, J.-M., Vilgalys, R. and Lutzoni, F. 2002. Phylogeny of agarics: partial systematics solutions for bryophilous omphalinoid agarics outside of the Agaricales (Euagarics). Mycotaxon 82: 151-168.
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Moncalvo, J.-M., Lutzoni, F. M., Rehner, S. A., Johnson, J., and Vilgalys, R. 2000. Phylogenetic relationships of agaric fungi based on nuclear large subunit ribosomal DNA sequences. Systematic Biology 49:278-305.
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[These results were first presented as a poster paper at the Asilomar Fungal Genetics Conference on March 20-22, 1996.] Website (outside link)

Lutzoni, F. 1997. Phylogeny of lichen- and non lichen-forming omphalinoid mushrooms and the utility of testing for combinability among multiple data sets. Systematic Biology 46:373-406 (journal cover). Downloadable data set (Stuffit file)
TreeBase website.

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